a person in the record
Pierre Peterlongo
Researcherborn 1978
Supervised 8 doctoral students at Université de Rennes and Université de Rennes 1; doctorate at Université de Marne la Vallée in 2006 under Maxime Crochemore and Marie-France Sagot; Wikidata names Marie-France Sagot and Maxime Crochemore as doctoral advisors. Linked to Wikidata, ORCID, and IdRef.
How to read the markscited by a repository's recordstated by Wikidata or indexed by OpenAlexclaimed on an ORCID list, or inferred
Advisors2
The thesis record names Maxime Crochemore and Marie-France Sagot; Wikidata names Marie-France Sagot and Maxime Crochemore.
- cited by a thesis record
Maxime Crochemore“Filtrage de séquences d'ADN pour la recherche de longues répétitions multiples”
2006 · Université de Marne la Vallée · doctoral - cited by a thesis record
Marie-France Sagot“Filtrage de séquences d'ADN pour la recherche de longues répétitions multiples”
2006 · Université de Marne la Vallée · doctoral
Students8
- cited by a thesis record2024 · Université de Rennes · doctoral
- cited by a thesis record
Garance Gourdel“Sketch-based approaches to process massive string data”
2023 · Université de Rennes · doctoral - cited by a thesis record2023 · Université de Rennes · doctoral
- cited by a thesis record
Kévin da Silva“Identification and quantification of microbial strains in metagenomic samples using variation graphs”
2022 · Université de Rennes 1 · doctoral - cited by a thesis record
Téo Lemane“Indexing and analysis of large sequencing collections using k-mer matrices”
2022 · Université de Rennes · doctoral - cited by a thesis record
Camille Marchet“From reads to transcripts: de novo methods for the analysis of transcriptome second and third generation sequencing.”
2018 · Université de Rennes 1 · doctoral - cited by a thesis recordstated by Wikidata
Antoine Limasset“Nouvelles approches pour l'exploitation des données de séquences génomique haut débit”
2017 · Université de Rennes · doctoral - cited by a thesis record
Nicolas Maillet“Comparaison de novo de données de séquençage issues de très grands échantillons métagénomiques : application sur le projet Tara Oceans”
2013 · Université de Rennes · doctoral
Advisors on Wikidata2
From Wikidata, shown separately from the thesis records.
- stated by Wikidata
- stated by Wikidata
The line above and below4 steps
The advisors of their advisors, four steps up at most, in the thesis records and on Wikidata, each kind marked; a person in both is listed once.
- 1 step up
stated by WikidataMarie-France Sagotcited by a thesis recordMarie-France Sagotstated by WikidataMaxime Crochemorecited by a thesis recordMaxime Crochemore
- 2 steps up
stated by WikidataAlain Viaristated by WikidataDominique Perrin
- 3 steps up
stated by WikidataMarcel-Paul Schützenberger
- 4 steps up
stated by WikidataAlbert Châteletstated by WikidataGeorges Darmois
Below them, within 3 steps, the record reaches 10 people: 10 cited by thesis records, 1 stated by Wikidata.
Theses1
- cited by a thesis record
Filtrage de séquences d'ADN pour la recherche de longues répétitions multiples
2006 · Université de Marne la Vallée · doctoral · Information, Structures, Systèmes · in French · the thesis's own page ›also named on this thesis
- cited by a thesis recordJean Bersteljury president
- cited by a thesis recordMathieu Blanchettereferee
- cited by a thesis recordMaxime Crochemorejury member
- cited by a thesis recordChristian Gautierreferee
- cited by a thesis recordGregory Kucherovreferee
- cited by a thesis recordThierry Lecroqjury member
- cited by a thesis recordNadia Pisantijury member
- cited by a thesis recordMarie-France Sagotjury member
Education and career2
From Wikidata, shown separately from the thesis records. Each place opens its Wikidata item.
- 2000 to 2006studied
- from 2022
Works1
2006 · held from 1 repository · a work missing?
- cited by HAL/TEL OAI's record
Filtrage de séquences d'ADN pour la recherche de longues répétitions multiples
2006 · doctoral thesis · HAL/TEL OAI
What their ORCID record lists
The works their own ORCID record lists, as they claim them: shown apart from the record's works, never checked or counted with them.
ORCID is asked for the list when this part is opened.
Papers in OpenAlex232
2004most in 2026: 592026
last at Centre National de la Recherche Scientifique, Institut national de recherche en sciences et technologies du numérique, Institut de Recherche en Informatique et Systèmes Aléatoires, GENSCALE: Algorithmes pour les données génomiques : passage à l'échelle, précision, frugalité, Université de Rennes
writes on Genomics and Phylogenetic Studies, Algorithms and Data Compression, Fractal and DNA sequence analysis, Genetic Mapping and Diversity in Plants and Animals, Microbial Community Ecology and Physiology
- indexed by OpenAlexcited 871
Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
2017 · Nature Methods · 67 authors - indexed by OpenAlexcited 370
Critical Assessment of Metagenome Interpretation: the second round of challenges
2022 · Nature Methods · 100 authors - indexed by OpenAlex2006 · Lecture notes in computer science · 5 authorscited 290
- indexed by OpenAlex2016 · Briefings in Bioinformatics · 60 authorscited 287
- indexed by OpenAlex2016 · bioRxiv (Cold Spring Harbor Laboratory) · 59 authorscited 144
- indexed by OpenAlexcited 129
KIS SPLICE: de-novo calling alternative splicing events from RNA-seq data
2012 · BMC Bioinformatics · 8 authors - indexed by OpenAlexcited 121
Multiple comparative metagenomics using multiset k -mer counting
2016 · PeerJ Computer Science · 7 authors - indexed by OpenAlexcited 111
Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems
2022 · eLife · 48 authors - indexed by OpenAlex2014 · Nucleic Acids Research · 8 authorscited 110
- indexed by OpenAlex2016 · BMC Genomics · 10 authorscited 95
the 25 most cited of 232
- indexed by OpenAlex2020 · Molecular Cancer · 16 authorscited 92
- indexed by OpenAlex2014 · Bioinformatics · 7 authorscited 79
- indexed by OpenAlexcited 74
Logan: Planetary-Scale Genome Assembly Surveys Life’s Diversity
2024 · bioRxiv (Cold Spring Harbor Laboratory) · 31 authors - indexed by OpenAlex2016 · BMC Bioinformatics · 4 authorscited 74
- indexed by OpenAlexcited 59
Fast and Scalable Minimal Perfect Hashing for Massive Key Sets
2017 · arXiv (Cornell University) · 4 authors - indexed by OpenAlex2012 · BMC Bioinformatics · 5 authorscited 56
- indexed by OpenAlexcited 55
Commet: Comparing and combining multiple metagenomic datasets
2014 · IEEE International Conference on Bioinformatics and Biomedicine (BIBM) · 5 authors - indexed by OpenAlexcited 52
A de novo approach to disentangle partner identity and function in holobiont systems
2018 · Microbiome · 13 authors - indexed by OpenAlexcited 51
kmtricks: efficient and flexible construction of Bloom filters for large sequencing data collections
2022 · Bioinformatics Advances · 4 authors - indexed by OpenAlexcited 43
Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs
2019 · Bioinformatics · 3 authors - indexed by OpenAlexcited 43
Mapsembler, targeted and micro assembly of large NGS datasets on a desktop computer
2012 · BMC Bioinformatics · 2 authors - indexed by OpenAlexcited 43
Identifying SNPs without a Reference Genome by Comparing Raw Reads
2010 · Lecture notes in computer science · 5 authors - indexed by OpenAlexcited 42
Critical Assessment of Metagenome Interpretation - the second round of challenges
2021 · bioRxiv (Cold Spring Harbor Laboratory) · 100 authors - indexed by OpenAlexcited 42
- indexed by OpenAlexcited 39
De novo clustering of long reads by gene from transcriptomics data
2018 · Nucleic Acids Research · 7 authors
Sat beside the lineage16
jury member, referee, or jury president, not advisor
- cited by a thesis record
Maël Lefeuvre“Parents, siblings, cousins... Reconstructing genetic kin relationships of human remains within an archaeological context using paleogenetic approaches.”
jury member · 2025 · Museum national d'histoire naturelle - MNHN PARIS · doctoral - cited by a thesis record
Camila Duitama González“Algorithms based on k-mers for ancient oral metagenomics : Tools for contamination removal and assessment in palaeometagenomics”
jury president · 2024 · Sorbonne Université · doctoral - cited by a thesis record
Sandra Romain“Identification, genotyping and representation of structural variants in pangenomes”
jury president · 2024 · Université de Rennes · doctoral - cited by a thesis record
Amandine Perrin“Tools for massive bacterial comparative genomics : Development and Applications”
referee · 2022 · Sorbonne Université · doctoral - cited by a thesis record
Vincent Sater“Développement de nouvelles méthodes algorithmiques pour le traitement des UMI à partir des données de séquençage haut débit.”
referee · 2021 · Normandie Université · doctoral - cited by a thesis record
Camille Sessegolo“Développement de méthodes bio-informatiques pour l’étude de l’épissage chez les espèces non modèles : Épissage complexe et apport des technologies de séquençage de 3eme génération.”
jury member · 2021 · ERABLE - Equipe de recherche européenne en algorithmique et biologie formelle et expérimentale · doctoral - cited by a thesis record
Kévin Gravouil“Modélisation de séquences et reconstruction non supervisée de génomes microbiens à partir de donnée métagénomiques.”
referee · 2019 · Université Clermont Auvergne [2017-2020] · doctoral - cited by a thesis record
Pierre Marijon“Novel components at the periphery of long read genome assembly tools”
jury member · 2019 · University of Lille · doctoral - cited by a thesis record
Pierre Morisse“Correction de données de séquençage de troisième génération”
jury member · 2019 · Normandie Université · doctoral - cited by a thesis record
Magali Jaillard Dancette“Fine mapping of antibiotic resistance determinants”
jury member · 2018 · Université de Lyon · doctoral - cited by a thesis record
Florian Plaza Onate“Reconstitution de pan-génomes microbiens par séquençage métagénomique aléatoire : Application à l’étude du microbiote intestinal humain”
referee · 2018 · Université Paris Saclay (COmUE) · doctoral - cited by a thesis record
Afaf Saaidi“Multi-dimensional probing for RNA secondary structure(s) prediction”
jury member · 2018 · Université Paris Saclay (COmUE) · doctoral - cited by a thesis record
Kamil Salikhov“Efficient algorithms and data structures for indexing DNA sequence data”
referee · 2017 · Université Paris-Est · doctoral - cited by a thesis record
Louise-Amelie Schmitt“Développement de modèles spécifiques aux séquences génomique virales”
referee · 2017 · Université de Bordeaux · doctoral - cited by a thesis record
Thomas Vannier“Dynamique de la structure des génomes et de leur biogéographie dans l’océan : analyses comparatives des données métagénomiques du projet Tara Oceans pour l’étude de la microalgue Bathycoccus et des communautés planctoniques globales”
jury member · 2017 · Université Paris Saclay (COmUE) · doctoral - cited by a thesis record
Tiayyba Riaz“Approches bioinformatiques pour l'assessment de la biodiversité”
jury member · 2011 · Université de Grenoble · doctoral